PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04234g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 148aa    MW: 16897.6 Da    PI: 9.9849
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04234g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.31.3e-101252141
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                              k+ ++k+  ++ +s+ ++ + K A  LS+LC++++a+iifs
  Niben101Scf04234g00003.1 12 KFLKDKRAEKIALSNKQKALSKRAMDLSILCGIDIAIIIFS 52
                              567899999*******************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.895464IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-5626IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-12675IPR002100Transcription factor, MADS-box
PfamPF003191.0E-81552IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-52641IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-54162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MTSQMKSKSE KKFLKDKRAE KIALSNKQKA LSKRAMDLSI LCGIDIAIII FSIVTGPFFF  60
GNPNVESVVR QFSQAKQSFS RRMTHEKTGG GEENDTMKKK KKKTINEEEK GESALQIFEP  120
TTLVRLEKLK QEIDELEKDL AEKIDELQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772696.11e-77PREDICTED: agamous-like MADS-box protein AGL61, partial
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-10AGAMOUS-like 61